Overview for Vitis vinifera (Grape)

Grape (Vitis vinifera) is grown primarily for human consumption as food or wine. It is mainly native to the Mediterranean region, Central Europe, Southwest Asia and the Western Cape in South Africa. Its diploid genome is estimated to be ~500 Mb in size. In agReg-SNPdb, we store 29,971 genes and 400,940 SNPs.

Statistics

(Last updated on 08.02.2022)

Number of chromosomes	33
Number of genes	29,971
Number of SNPs	400,940

Click on a chromosome to download the data stored in agReg-SNPdb for the complete chromosome

Chromosome	Number of SNPs	Number of Genes
1	28,610	1,541
10	2,390	949
10_random	29	57
11	15,757	1,185
11_random	9	13
12	11,168	1,440
12_random	996	46
13	16,261	1,454
13_random	1,074	176
14	34,282	1,840
15	22,142	1,142
16	15,220	1,266
16_random	1	47
17	19,789	1,085
17_random	1	18
18	28,033	2,061
18_random	2,424	241
19	14,414	1,345
1_random	446	8
2	17,539	1,106
3	12,538	1,249
3_random	1	32
4	29,851	1,498
4_random	0	6
5	32,941	1,604
5_random	0	14
6	25,506	1,394
7	18,877	1,505
7_random	18	86
8	30,499	1,627
9	20,124	1,297
9_random	0	11
Un	0	2,628

Distribution of rSNPs relative to the TSS

Input data (Ensembl Plants)

Plant	Assembly version	Download links
Vitis vinifera (grape)	12X	Reference genome SNPs Genes (downloaded on 08 November 2021)