agReg-SNPdb Plants






Georg-August-Universität Göttingen
CiBreed

Overview for Triticum turgidum (Durum wheat)

Triticum turgidum (durum wheat) is the tenth most important crop in the world, with a total production of around 35 million tons. Durum wheat is rich in protein and is particularly suitable for making pasta, but couscous and bulgur are also made from durum wheat. In agReg-SNPdb, we store 66,559 genes and 1,815,904 SNPs.


durum_wheat

Statistics

(Last updated on 08.02.2022)

Number of chromosomes 15
Number of genes 66,559
Number of SNPs 1,815,904

Click on a chromosome to download the data stored in agReg-SNPdb for the complete chromosome

Chromosome Number of SNPs Number of Genes
1A 116,380 3,911
1B 120,864 4,147
2A 148,393 5,201
2B 149,373 5,467
3A 131,446 4,971
3B 139,027 5,841
4A 120,953 4,398
4B 104,707 3,496
5A 130,656 4,686
5B 135,349 5,047
6A 105,374 3,658
6B 111,795 4,027
7A 129,401 4,893
7B 115,245 4,250
Un 56,941 2,566



Distribution of rSNPs relative to the TSS

SNP distance to TSS durum wheat
Distribution of SNPs around the TSS of durum wheat. The upper plot shows the counts for the whole promoter region (-7.5 kb to +2.5 kb) in 500 bp intervals. The enlargement shows the proximal promoter region (-750 bp to +250 bp) in 50 bp intervals. The red asterisk annotates the position of the TSS.


Input data (Ensembl Plants)

Plant Assembly version Download links
Triticum turgidum (durum wheat) Svevo.v1 Reference genome
SNPs
Genes
(downloaded on 08 November 2021)