agReg-SNPdb Plants






Georg-August-Universität Göttingen
CiBreed

Overview for Sorghum bicolor (Sorghum)

Sorghum bicolor (also called sorghum or sorghum millet) is a cereal crop that is not only suitable for consumption, but is also used as a biofuel and potential cellulose feedstock. Sorghum bicolor originated in Africa and is grown as a forage grass there as well as in America, Asia and Europe in drier, warm and temperate climates. In agReg-SNPdb, we store 34,023 genes and 8,081,051 SNPs.


sorghum

Statistics

(Last updated on 08.02.2022)

Number of chromosomes 10
Number of genes 34,023
Number of SNPs 8,081,051

Click on a chromosome to download the data stored in agReg-SNPdb for the complete chromosome

Chromosome Number of SNPs Number of Genes
1 1,023,336 5,730
10 736,375 2,945
2 959,714 4,416
3 976,141 4,676
4 851,492 3,784
5 769,330 2,434
6 691,412 2,953
7 736,084 2,372
8 644,030 2,026
9 693,137 2,687



Distribution of rSNPs relative to the TSS

SNP distance to TSS sorghum
Distribution of SNPs around the TSS of sorghum. The upper plot shows the counts for the whole promoter region (-7.5 kb to +2.5 kb) in 500 bp intervals. The enlargement shows the proximal promoter region (-750 bp to +250 bp) in 50 bp intervals. The red asterisk annotates the position of the TSS.


Input data (Ensembl Plants)

Plant Assembly version Download links
Sorghum bicolor (sorghum) Sorghum_bicolor_NCBIv3 Reference genome
SNPs
Genes
(downloaded on 22 December 2021)