Overview for Oryza sativa Indica (Asian rice Indica)

Asian rice (Oryza sativa), the most commonly grown rice species, contains two main subspecies: the sticky, short-grain (Oryza sativa Japonica) and the non-sticky, long-grain (Oryza sativa Indica) rice varieties. Oryza sativa Indica is grown mainly in hot climates of Southern Asia, while Oryza sativa Japonica is mainly grown in temperate climates such as Japan. It has a diploid genome of ~500 Mb. For Oryza sativa Indica, 37,878 genes and 4,340,785 SNPs are stored in agReg-SNPdb.

Statistics

(Last updated on 08.02.2022)

Number of chromosomes	12
Number of genes	37,878
Number of SNPs	4,340,785

Click on a chromosome to download the data stored in agReg-SNPdb for the complete chromosome

Chromosome	Number of SNPs	Number of Genes
1	539,939	5,292
10	257,980	2,186
11	271,226	2,240
12	277,705	2,132
2	460,983	4,069
3	449,805	4,659
4	359,455	3,405
5	356,754	3,067
6	375,689	3,163
7	356,869	2,801
8	340,565	2,768
9	293,815	2,096

Distribution of rSNPs relative to the TSS

Input data (Ensembl Plants)

Plant	Assembly version	Download links
Oryza sativa Indica (Asian rice Indica Group)	ASM465v1	Reference genome SNPs Genes (downloaded on 22 December 2021)