Overview for Oryza glumipatula (Wild rice)

Oryza glumipatula (also referred to as Oryza glumaepatula) is a wild rice from South America. It is one of the investgated species in the Oryza Map Alignment Project (OMAP), which aims at sequencing, aligning and annotating wild rice species of the genus Oryza. Its nuclear genome is ~464 Mb in size and contains 12 chromosomes. In agReg-SNPdb, we store 35,735 genes and 4,865,161 SNPs.

Statistics

(Last updated on 08.02.2022)

Number of chromosomes	12
Number of genes	35,735
Number of SNPs	4,865,161

Click on a chromosome to download the data stored in agReg-SNPdb for the complete chromosome

Chromosome	Number of SNPs	Number of Genes
1	567,583	4,977
10	329,882	1,973
11	401,063	2,281
12	388,085	2,181
2	469,664	3,935
3	422,751	4,133
4	436,375	3,047
5	380,234	2,936
6	423,942	2,939
7	363,742	2,710
8	369,743	2,523
9	312,097	2,100

Distribution of rSNPs relative to the TSS

Input data (Ensembl Plants)

Plant	Assembly version	Download links
Oryza glumipatula (wild rice)	Oryza_glumaepatula_v1.5	Reference genome SNPs Genes (downloaded on 08 November 2021)