Overview for Helianthus annuus (Sunflower)

The domesticated sunflower (Helianthus annuus) is grown as a crop for its edible oil and fruits. Due to its yield stability under a wide range of environmental conditions, including drought, it is considered to be of great importance in terms of climate change adaptation. Its large diploid genome of 3.6 Gb in size contains many long and very similar repeats, making the assembly challenging and leading to many unmapped contigs. In agReg-SNPdb, we store 52,191 genes and 11,834 SNPs.

Statistics

(Last updated on 08.02.2022)

Number of chromosomes	191
Number of genes	52,191
Number of SNPs	11,834

Click on a chromosome to download the data stored in agReg-SNPdb for the complete chromosome

Chromosome	Number of SNPs	Number of Genes
1	780	2,842
10	1,332	3,860
11	500	3,041
12	434	2,824
13	744	3,641
14	630	3,282
15	561	3,156
16	835	3,197
17	1,208	3,444
2	878	2,611
3	525	3,092
4	471	3,143
5	993	3,185
6	194	1,981
7	335	1,972
8	767	2,752
9	647	3,607
HanXRQChr00c0001	0	1
HanXRQChr00c0002	0	1
HanXRQChr00c0003	0	5
HanXRQChr00c0004	0	2
HanXRQChr00c0005	0	1
HanXRQChr00c0011	0	1
HanXRQChr00c0014	0	1
HanXRQChr00c0016	0	1
HanXRQChr00c0019	0	1
HanXRQChr00c0020	0	1
HanXRQChr00c0024	0	1
HanXRQChr00c0025	0	1
HanXRQChr00c0027	0	1
HanXRQChr00c0028	0	2
HanXRQChr00c0029	0	3
HanXRQChr00c0033	0	1
HanXRQChr00c0034	0	1
HanXRQChr00c0036	0	2
HanXRQChr00c0037	0	1
HanXRQChr00c0038	0	3
HanXRQChr00c0040	0	2
HanXRQChr00c0041	0	3
HanXRQChr00c0042	0	1
HanXRQChr00c0046	0	1
HanXRQChr00c0049	0	1
HanXRQChr00c0050	0	2
HanXRQChr00c0057	0	1
HanXRQChr00c0059	0	1
HanXRQChr00c0060	0	1
HanXRQChr00c0062	0	4
HanXRQChr00c0063	0	1
HanXRQChr00c0070	0	1
HanXRQChr00c0090	0	1
HanXRQChr00c0094	0	1
HanXRQChr00c0095	0	2
HanXRQChr00c0099	0	1
HanXRQChr00c0102	0	1
HanXRQChr00c0109	0	1
HanXRQChr00c0112	0	2
HanXRQChr00c0117	0	2
HanXRQChr00c0125	0	2
HanXRQChr00c0126	0	8
HanXRQChr00c0133	0	1
HanXRQChr00c0136	0	1
HanXRQChr00c0137	0	2
HanXRQChr00c0140	0	4
HanXRQChr00c0141	0	1
HanXRQChr00c0143	0	2
HanXRQChr00c0153	0	1
HanXRQChr00c0158	0	1
HanXRQChr00c0165	0	10
HanXRQChr00c0167	0	1
HanXRQChr00c0172	0	1
HanXRQChr00c0191	0	1
HanXRQChr00c0195	0	1
HanXRQChr00c0199	0	1
HanXRQChr00c0202	0	1
HanXRQChr00c0203	0	1
HanXRQChr00c0211	0	3
HanXRQChr00c0212	0	2
HanXRQChr00c0214	0	2
HanXRQChr00c0215	0	2
HanXRQChr00c0219	0	1
HanXRQChr00c0224	0	1
HanXRQChr00c0225	0	1
HanXRQChr00c0237	0	1
HanXRQChr00c0258	0	2
HanXRQChr00c0261	0	1
HanXRQChr00c0264	0	2
HanXRQChr00c0268	0	5
HanXRQChr00c0272	0	7
HanXRQChr00c0289	0	5
HanXRQChr00c0297	0	1
HanXRQChr00c0300	0	12
HanXRQChr00c0303	0	2
HanXRQChr00c0311	0	2
HanXRQChr00c0313	0	10
HanXRQChr00c0314	0	7
HanXRQChr00c0316	0	1
HanXRQChr00c0321	0	1
HanXRQChr00c0324	0	1
HanXRQChr00c0328	0	5
HanXRQChr00c0331	0	1
HanXRQChr00c0336	0	9
HanXRQChr00c0339	0	4
HanXRQChr00c0343	0	2
HanXRQChr00c0345	0	8
HanXRQChr00c0349	0	7
HanXRQChr00c0352	0	2
HanXRQChr00c0354	0	2
HanXRQChr00c0368	0	6
HanXRQChr00c0377	0	3
HanXRQChr00c0378	0	1
HanXRQChr00c0379	0	3
HanXRQChr00c0386	0	3
HanXRQChr00c0392	0	5
HanXRQChr00c0394	0	8
HanXRQChr00c0397	0	2
HanXRQChr00c0423	0	1
HanXRQChr00c0434	0	5
HanXRQChr00c0439	0	6
HanXRQChr00c0448	0	3
HanXRQChr00c0451	0	4
HanXRQChr00c0452	0	1
HanXRQChr00c0454	0	5
HanXRQChr00c0458	0	1
HanXRQChr00c0486	0	1
HanXRQChr00c0492	0	6
HanXRQChr00c0494	0	1
HanXRQChr00c0495	0	2
HanXRQChr00c0496	0	7
HanXRQChr00c0504	0	5
HanXRQChr00c0509	0	1
HanXRQChr00c0512	0	2
HanXRQChr00c0524	0	4
HanXRQChr00c0527	0	1
HanXRQChr00c0530	0	5
HanXRQChr00c0533	0	6
HanXRQChr00c0537	0	1
HanXRQChr00c0540	0	3
HanXRQChr00c0554	0	5
HanXRQChr00c0557	0	9
HanXRQChr00c0560	0	5
HanXRQChr00c0561	0	2
HanXRQChr00c0572	0	8
HanXRQChr00c0582	0	1
HanXRQChr00c0584	0	1
HanXRQChr00c0585	0	10
HanXRQChr00c0588	0	1
HanXRQChr00c0593	0	12
HanXRQChr00c0601	0	5
HanXRQChr00c0625	0	1
HanXRQChr00c0634	0	6
HanXRQChr00c0635	0	2
HanXRQChr00c0687	0	1
HanXRQChr00c0690	0	3
HanXRQChr00c0699	0	1
HanXRQChr00c0702	0	5
HanXRQChr00c0703	0	6
HanXRQChr00c0714	0	1
HanXRQChr00c0718	0	3
HanXRQChr00c0734	0	1
HanXRQChr00c0746	0	4
HanXRQChr00c0747	0	3
HanXRQChr00c0758	0	1
HanXRQChr00c0759	0	5
HanXRQChr00c0767	0	1
HanXRQChr00c0780	0	1
HanXRQChr00c0788	0	4
HanXRQChr00c0823	0	3
HanXRQChr00c0838	0	1
HanXRQChr00c0863	0	1
HanXRQChr00c0871	0	1
HanXRQChr00c0881	0	1
HanXRQChr00c0894	0	1
HanXRQChr00c0903	0	1
HanXRQChr00c0920	0	1
HanXRQChr00c0925	0	4
HanXRQChr00c0927	0	1
HanXRQChr00c0946	0	1
HanXRQChr00c0952	0	1
HanXRQChr00c0981	0	1
HanXRQChr00c0988	0	4
HanXRQChr00c0994	0	4
HanXRQChr00c1024	0	2
HanXRQChr00c1149	0	1
HanXRQChr00c1184	0	1
HanXRQChr00c1189	0	1
HanXRQChr00c1196	0	1
HanXRQChr00c1250	0	1
HanXRQChr00c1257	0	1
HanXRQChr00c1287	0	2
Mt	0	47
sequence	0	55

Distribution of rSNPs relative to the TSS

Input data (Ensembl Plants)

Plant	Assembly version	Download links
Helianthus annuus (sunflower)	HanXRQr1.0	Reference genome SNPs Genes (downloaded on 08 November 2021)